Bioinformatics: from Algorithms to Applications 2019 has ended

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Bioinformatics: from Algorithms to Applications 2019

09:00 MSK

Registration High School of Management SPbU “Mikhailovskaya Dacha”

09:45 MSK

Opening Ceremony High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Anton Korobeynikov • Alla Lapidus

09:55 MSK

Notes High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Anton Korobeynikov

10:00 MSK

Direct queries of metagenome assembly graphs reveal hidden biological complexity High School of Management SPbU “Mikhailovskaya Dacha”; room 1221C. Titus Brown

11:00 MSK

Synteny paths for assembly graphs comparison High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Evgeny Polevikov

11:20 MSK

Indexing De Bruijn graphs with minimizers High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Camille Marchet

11:40 MSK

PathRacer: racing profile HMM paths on assembly graph High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Alexander Shlemov

12:00 MSK

Break High School of Management SPbU “Mikhailovskaya Dacha”

12:30 MSK

Reproducible metagenomic at scale High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Mick Watson

13:30 MSK

Recovery of closed genomes of member species from enrichment reactor microbial communities using long read metagenomics High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Krithika Arumugam

13:50 MSK

Computational vision to detect chromosomal loops High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Axel Cournac

14:10 MSK

Whole-chromosome assembly and analysis of hybridogenetic lineages of the desert ant Cataglyphis hispanica with instaGRAAL, a Hi-C based scaffolder and polisher High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Lyam Baudry

14:30 MSK

Group Photo High School of Management SPbU “Mikhailovskaya Dacha”

14:40 MSK

Lunch High School of Management SPbU “Mikhailovskaya Dacha”

15:40 MSK

Biotech from theory to reality: the journey of creating and marketing groundbreaking technology High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Andrey Perfilyev

16:30 MSK

SPAligner: alignment of long diverged molecular sequences to assembly graphs High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Dmitry Antipov

16:50 MSK

Million sequences indexing High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Antoine Limasset

17:10 MSK

Hybrid RNA-Seq assembly and its application to transcriptome study of Cynara cardunculus High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Andrey Prjibelski

17:30 MSK

Combinatorial Scoring of Phylogenetic Trees and Networks Based on Homoplasy-Free Characters High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Max Alekseyev

18:30 MSK

Bus High School of Management SPbU “Mikhailovskaya Dacha”

18:40 MSK

Meet & greet Restaurant Shuvalovka

23:00 MSK

Bus Restaurant Shuvalovka

10:00 MSK

Metabolic adaptation in the human gut microbiota during pregnancy and infancy High School of Management SPbU “Mikhailovskaya Dacha”; room 1221M. Pilar Francino

11:00 MSK

Higher-order and multidimensional epistasis in high-throughput experimental data High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Dmitry Ivankov

11:30 MSK

Break High School of Management SPbU “Mikhailovskaya Dacha”

12:00 MSK

Insights into the human gut microbiota from a (meta-)genomic perspective High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Rob Finn

13:00 MSK

Dysbiosis signatures from metagenomes reveal differences and similarities between inflammatory diseases High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Vadim Dubinsky

13:20 MSK

On the Verge of Colistin Resistance: Genetic Determinants Mediating Intermediate Colistin Resistance in Klebsiella pneumoniae High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Sima Tokajian

13:40 MSK

Antimicrobial Resistance and Clonality of Streptococcus pneumoniae Isolates in Russia High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Irina Tsvetkova

14:00 MSK

Lunch High School of Management SPbU “Mikhailovskaya Dacha”

15:30 MSK

Factors Influencing Soil and Air Microbiomes High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Rob Knight

16:30 MSK

Computational biology and agriculture: soil microbiome High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Evgeny Andronov

16:50 MSK

Revealing mechanisms of the Bacillus thuringiensis host specificity via modeling coevolution of Cry toxins and their receptors High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Yury V. Malovichko

17:10 MSK

Genomic determinants underlying rodenticidal properties of the Salmonella enteritidis var. Issatschenko High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Kirill Antonets

17:30 MSK

Bacteriophage recombination site helps to reveal genes potentially acquired through horizontal gene transfer. High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Maria A. Daugavet

18:00 MSK

Poster Section High School of Management SPbU “Mikhailovskaya Dacha”Evgeny Andronov • Karina P. Chalenko • Anna Gorbunova • Mikhail L. Gordon • Semyon Grigorev • Song Guo • Stanislav Iablokov • Sergey Kazakov • Gennady V. Khvorykh • Yasumasa Kimura • Yulia Kondratenko • Cyril Matthey-Doret • Vladimir Mikryukov • Mike Rayko • Sergei Shchyogolev • Gulnara Tagirdzhanova • Sima Tokajian • Anastasia Vinogradova • Paul Wilburn • Yulia Yakovleva • Pawel Zayakin

19:00 MSK

Bus High School of Management SPbU “Mikhailovskaya Dacha”

10:00 MSK

A Moving landscape of Comparative Genomics in Mammals High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Stephen O'Brien

11:00 MSK

A universal transcriptomic signature of age reveals the temporal scaling of Caenorhabditis elegans aging trajectories High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Andrei E. Tarkhov

11:20 MSK

DASE-AG: conditional-specific differential alternative splicing events estimation method for around-gap regions High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Kouki Yonezawa

11:45 MSK

Break High School of Management SPbU “Mikhailovskaya Dacha”

12:15 MSK

Adapting bioinformatics to bacteriophage genomics and virome studies High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Marie-Agnès Petit

13:15 MSK

NPS: scoring and evaluating the statistical significance of peptidic natural product–spectrum matches High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Alexey Gurevich

13:35 MSK

Local sequence alignment using intra-processor parallelism High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Alexander Tiskin

13:55 MSK

HEDGE: Highly accurate GPU-powered protein-protein docking pipeline High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Timofei Ermak

14:15 MSK

Probabilistic model of V-D junction formation in human Ig heavy chain genes and its application High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Evgeny A. Bakin

14:45 MSK

Lunch High School of Management SPbU “Mikhailovskaya Dacha”

16:00 MSK

Connecting the Microbiome and Ecology to the Gut-Brain Axis High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Rob Knight

17:00 MSK

Reconstructing haplotype-specific cancer genome karyotypes with multiple sequencing technologies High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Sergey Aganezov

17:20 MSK

In pursuit of molecular mechanism for induced granulocytic differentiation: systems biology approach High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Svetlana Novikova

17:40 MSK

Gene Set Mining In Context Relevant Pubmed Corpora High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Christophe Van Neste

18:00 MSK

Closing Remarks High School of Management SPbU “Mikhailovskaya Dacha”; room 1221Alla Lapidus

19:00 MSK

Bus High School of Management SPbU “Mikhailovskaya Dacha”

19:30 MSK

Evening reception TBA